Microbes – Phytoplankton & Bacteria

Prior to ADDOMEx

  • Steichen, J.L., Denby, A., Windham, R., Brinkmeyer, R. and Quigg, A. 2015  A Tale of Two Ports: Dinoflagellate and Diatom communities found in the high ship traffic region of Galveston Bay, Texas (USA). Journal of Coastal Research. doi: http://dx.doi.org/10.2112/JCOASTRES-D-13-00225.1  January 2015
  • McInnes, A. S., Nunnally, C. C, Rowe, G. T., Davis, R. W. and Quigg, A. 2015  Undetected blooms in Prince William Sound: using multiple techniques to elucidate the base of the summer food web. Estuaries and Coasts. 10.1007/s12237-014-9924-0 January 2015
  • Jiang, Y., Laverty, K.S., Brown, J., Brown, L., Chagoya, J., Burow, M. and Quigg, A.  2014 Effect of silicate limitation on growth, cell composition and lipid production of three native diatoms to Southwest Texas desert.  Journal of Applied Phycology. doi: 10.1007/s10811-014-0463-7  November 2014
  • Jiang, Y., Nunez, M., Laverty, K.S., and Quigg, A. 2014 Coupled effect of silicate and nickel on the growth and lipid production. Journal of Applied Phycology. doi: 10.1007/s10811-014-0412-5 9/25/2014  September 2014
  • Chekalyuk, A., Barnard, A., Quigg, A., Hafez, M. and Zhao, Y. 2014 Aquatic Laser Fluorescence Analyzer: Field evaluation in the Northern Gulf of Mexico. Optics express.  22 (18), 21641-21656. http://dx.doi.org/10.1364/OE.22.021641
  • McInnes AS, Shepard AK, Raes EJ, Waite AM and Quigg, A.  2014  Simultaneous quantification of active carbon and nitrogen fixing communities and estimation of rates using fluorescence in situ hybridization and flow cytometry. Applied and Environmental Microbiology. 80: 6750-6759.
  • Steichen, J., Schulze, A., Brinkmeyer, R. and Quigg, A. 2014  All aboard! A biological survey of ballast water onboard vessels travelling the North Atlantic Ocean. Marine Pollution Bulletin. 87: 201-210.
  • Nunnally, C.C., DiMarcoS.F., Quigg, A., Chapman, O., Rowe, G.T. 2014  Benthic-Pelagic Coupling in the Gulf of Mexico Hypoxic Area:  Sedimentary enhancement of eutrophic conditions and near bottom primary production. Continental Shelf Research. 85: 143-152. doi: 10.1016/j.csr.2014.06.006
  • Chagoya, J.C., Brown, J., Gomez, S.M., Zhang, J., Jiang, Y., Laverty, K., Brown, L., Quigg, A. and Burow, M. D. 2014 Media Optimization and Lipid Formation of Two Native Diatoms for Cultivation in the Southwest Texas Desert. Journal of Applied Phycology. 26: 2075-2085.  doi: 10.1007/s10811-014-0238-1
  • Zhao, Y. and Quigg, A. 2014  Nutrient limitation in Northern Gulf of Mexico (NGOM): phytoplankton communities and photosynthesis respond to nutrient pulse. PLOS One. 9(2): e88732. doi:10.1371/journal.pone.0088732
  • Jiang, Y., Laverty, K.S., Brown, J., Nunez, M., Brown, L., Chagoya, J., Burow, M. and Quigg, A. 2014  Effects of fluctuating temperature and silicate supply on the growth, biochemical composition and lipid accumulation of Nitzschia sp. Bioresource Technology 154: 336–344.
  • Y. Wu, D.A. Campbell, A.J. Irwin, D.J. Suggett, Z.V. Finkel. 2014. Ocean acidification enhances the growth rate of larger diatoms. Limnology & Oceanography. 59: 1027-1034.
  • Y. Wu, J. Jeans, D.J. Suggett, Z.V. Finkel, D.A. Campbell.  2014. Large centric diatoms allocate more cellular nitrogen to photosynthesis to counter slower RUBISCO turnover rates.  Frontiers in Marine Science: Global Change and the Future Oceans. doi: 10.3389/fmars.2014.00068
  • Seebah S, Fairfield C, Ullrich MS, Passow U 2014. Aggregation and sedimentation of Thalassiosira weissflogii (diatom) in a warmer and more acidified future ocean. PLoS ONE 9: e112379.
  • Moriceau B, Laruelle GG, Passow U, Cappellen PV, Ragueneau O 2014.  Biogenic silica dissolution in diatom aggregates: insights from relative transport modelling Marine Ecology Progress Series 517:35-49.
  • Chuang, C.-Y., Santschi, P.H., Jiang, Y., Ho, Y.-F., Quigg, A., Guo, L.D.,, Ayranov, M., Schumann, D. 2014. Important role of diatoms in the scavenging of particle reactive radionuclides, Thorium, Protactinium, Lead, Polonium and Beryllium, in the ocean: a case study with Phaeodactylum tricornutum. Limnol. Oceanogr., 59(4), 1256–1266. S
  • hiek, CS, K Anantharaman, JA Breier, JB Sylvan,KJ Edwards & GJ Dick.  2014.  Deep ocean background microbial communities are primary colonizers of hydrothermal plumes across a back-arc spreading basin.  The ISME Journal.  doi: 10.1038/ismej.2014.22
  • Meyers, MJ, JB Sylvan and KJ Edwards.  2014.  Extracellular enzyme activity and microbial diversity measured on seafloor exposed basalts from Loihi Seamount indicate importance of basalts to global biogeochemical cycling.  Applied and Environmental Microbiology, 80(16): 4854-4864.
  • Orcutt, BN, DE LaRowe, JF Biddle, FS Colwell, BT Glazer, BK Reese, JB Kirkpatrick,LL Lapham, HJ Mills, JB Sylvan, SD Wankel and CG Wheat.  2013.  Microbial activity in the marine deep biosphere: progress and prospects. Frontiers in Microbiology 4:189. doi:10.3389/ fmicb.2013.00189
  • Sylvan, JB, TY Sia, AG Haddad, LJ Briscoe, BM Toner, PR Girguis and KJ Edwards.  2013.  Low temperature geomicrobiology follows host rock composition along a geochemical gradient in Lau Basin.  Frontiers in Microbiology, 4: 61.  doi:10.3389/fmicb.2013.00061.
  • Sylvan, JB and JW Ammerman.  2013.  Organic nutrient distributions on the Louisiana continental shelf during spring and summer 2004: implications for annual hypoxia development.  Marine Chemistry, 154: 113-123.
  • A.D. Barton, A.J. Pershing, E. Litchman, Z.V. Finkel, T. Kiørboe, N.R. Record, K.F. Edwards, B.A. Ward. 2013. The biogeography of plankton traits.  Ecology Letters. 16(4): 522-534.
  • C.M. Mutshinda, Z.V. Finkel, A.J. Irwin. 2013. Which environmental factors control phytoplankton populations? A Bayesian variable selection approach. Ecological Modelling. 269: 1-8. Supplement. 10.1016/j.ecolmodel.2013.07.025
  • A.D. Barton, Z.V. Finkel, B.A. Ward, D.G. Johns, M.J. Follows. 2013. The roles of cell size and trophic strategy in North Atlantic diatom and dinoflagellate communities. Limnology & Oceanography. 58: 254-266.
  • C.M. Mutshinda, L. Troccoli-Ghinaglia, Z.V. Finkel, F. Muller-Karger, A.J. Irwin.  2013. Environmental regulation of phytoplankton community structure in the Cariaco Basin. Marine Biology Research. 9(3): 247-261.
  • Quigg, A., Chin, W.-C., Chen, C.-S., Zhang, S., Jiang, Y., Miao, A.-J., Schwehr, K.A., Xu, C., and Santschi, P.H. 2013. Direct and indirect toxic effects of engineered nanoparticles on algae: role of natural organic matter. In: Special Issue on Sustainable Nanotechnology in ACS Sustainable Chemistry & Engineering, 1, 686−702; dx.doi.org/10.1021/sc400103x.
  • Zhang, S., Jiang, Y., Chen, C.-S., Creeley, D., Schwehr, K.A., Quigg, A., Chin, W.-C., and Santschi, P.H. 2013. Ameliorating Effects by Extracellular Polymeric Substances excreted byThalassiosira pseudonana on algal toxicity of CdSe Quantum Dots. Aquatic Toxicology, 126, 214– 223.
  • Boyd P, Rynearson T, Armstrong E, Fu F, Hayashi K, Hu Z, Hutchins D, Kudela R, Litchman E, Mulholland M, Passow U, Strzepek R, Whittaker K, Yu E, Thomas M  2013. Marine Phytoplankton Temperature versus Growth Responses from Polar to Tropical Waters – Outcome of a Scientific Community-Wide Study. PLOS One 8:e63091.
  • Martin, R. E. and Quigg, A. 2013 Tiny Plants That Once Ruled the Seas. Scientific American. 308: 40-45.
  • Quigg, A., Al-Anasi, M., Nour Al Din, N., Wei,C-L., Nunnally, C.C., Al-Ansari, I.S., Rowe, G., Soliman, Y., Al-Maslamani, I.,  Mahmoud, I.,  Youseff, N. and Abdel Moati, M.A. 2013bPhytoplankton along the coastal shelf of an oligotrophic hypersaline environment in a semi-enclosed marginal sea: Qatar (Arabian Gulf). Continental Shelf Research. 60: 1-16.
  • Quigg, A., Nunnally, C.C., McInnes, A. S., Gay, S., Rowe, G., Dellapenna, T.M. and Davis, R. 2013a  Hydrographic and biological controls in two subarctic fjords: an environmental case study of how climate change could impact phytoplankton communities Marine Ecology Progress Series. 480: 21-37.
  • Roelke, D.L., Li, H-P., Hayden, N.J., Miller, C.J., Davis, S. E., Quigg, A. and Buyukates, Y. 2013  Co-occurring and opposing freshwater inflow effects on phytoplankton biomass, productivity and community composition of Galveston Bay, USA. Marine Ecology Progress Series. 477: 61–76.
  • Bianchi, T. S., Garcia Tigreros, F.,Yvon-Lewis, S., Shields, M., Mills, H., Butman, D., Osburn, C., Raymond, P., Shank, C., DiMarco, S. F., Walker, N., Reese, B., Mullins, R., Quigg, A., Aiken, G.R., and Grossman, E. 2013 Enhanced Transfer of Terrestrially-Derived Carbon to the Atmosphere in a Flooding Event. Geophysical Research Letters. 40: 1-7.
  • Nunnally, C.C.; Rowe, G.T.; Thornton, D.C.O., and Quigg, A. 2013  Sedimentary oxygen consumption and nutrient regeneration in the Gulf of Mexico hypoxic zone. In: Brock, J.C.; Barras, J.A., and Williams, S.J. (eds.), Understanding and Predicting Change in the Coastal Ecosystems of the Northern Gulf of Mexico, Journal of Coastal Research Special Issue 63: 84–96.
  • Quigg, A.,Kotabová, E., Jarešová, J., Kaňa, R.,  Šetlík, J., Šedivá, B., Komárek, O. and Prášil, O. 2012  Photosynthesis in Chromera velia represents a simple system with high efficiency. PLOS One. 7(10): e47036.
  • Dorado, S., Rooker, J. R., Wissel, B. and Quigg, A. 2012  Isotope baseline shifts in pelagic food webs of the Gulf of Mexico. Marine Ecology Progress Series. 464: 37- 49.
  • Bragg, J.G., Quigg, A., Raven, J.A., Wagner, A. 2012  Protein elemental sparing and codon usage bias are correlated among bacteria. Molecular Ecology. 21: 2480–2487.
  • Martin, R. E. and Quigg, A. 2012 Evolving Phytoplankton Stoichiometry Fueled Diversification of the Marine Biosphere. Geosciences. Special Issue on Paleontology and Geo/Biological Evolution. 2: 130-146.
  • Jiang, Y.,Yoshida, T.,and Quigg, A. 2012 Photosynthetic performance, lipid production and biomass composition in response to nitrogen limitation in marine microalgae. Plant Physiology and Biochemistry. 54: 70-77.
  • Steichen, J., Windham, R., Brinkmeyer, R. and Quigg, A. 2012  Ballast water impacts on Galveston Bay, Texas. Bulletin marine pollution. 64: 779–789.
  • S.C. Sharpe, J.A. Koester, M. Loebl, A.M. Cockshutt, D.A. Campbell, A.J. Irwin, Z.V. Finkel. 2012. Metabolic size scaling within and across cryptic species of Ditylum brightwellii (Bacillariophyceae). PLoS One 7(12): e52916. 10.1371/journal.pone.0052916.
  • H. van Tol, A.J. Irwin, Z.V. Finkel. 2012. Macroevolutionary trends in silicoflagellate skeletal morphology: the costs and benefits of silicification. Paleobiology. 38(3): 391-402.
  • A.J. Irwin, A.M. Nelles, Z.V. Finkel. 2012. Phytoplankton niches estimated from field data. Limnology and Oceanography. 57(3): 787-797.
  • Arnosti C, Fuchs BM, Amann R, Passow U 2012. Contrasting extracellular enzyme activities of particle-associated bacteria from distinct provinces of the North Atlantic Ocean. Frontiers in Microbiology 3.
  • Gaerdes A, Ramaye Y, Grossart H-P, Passow U, Ullrich MS 2012. Effects of Marinobacter adhaerens HP15 on polymer exudation by Thalassiosira weissflogii at different N: P ratios. Marine Ecology Progress Series 461:1-14.
  • Sylvan, JB, BM Toner & KJ Edwards.  2012.  Life and death of deep-sea hydrothermal sulfides: Bacterial diversity and ecosystem succession.  mBio 3(1): e00279.
  • Biddle, JF, JB Sylvan, WJ Brazelton, BJ Tully, KJ Edwards, CL Moyer, JF Heidlberg & WC      Nelson.  2012.  Prospects for the study of evolution in the deep biosphere.  Frontiers in Microbiology, 2: 285.  doi:10.3389/fmicb.2011.00285.
  • Edwards, KJ, CG Wheat & JB Sylvan.  2011.  Under the sea: life in volcanic oceanic crust.   Nature Reviews Microbiology, 9: 703-712.
  • Sylvan, JB, A Quigg, S Tozzi & JW Ammerman.  2011.  Mapping phytoplankton community physiology on a river impacted continental shelf: testing a multifaceted approach. Estuaries and Coasts. 34: 1220-1233.
  • Orcutt, BN, JB Sylvan, N Knab & KJ Edwards.  2011.  Microbiology of the dark ocean: Microbial life in the dark at, above and below the seafloor. Microbiology and Molecular Biology Reviews,75(2): 361-422.
  • Quigg, A, JB Sylvan, AB Gustafson, TR Fisher, RL Oliver, S Tozzi and JW Ammerman.  2011. Going west: role of phosphorus limitation in expanding primary production across the Louisiana shelf.  Aquatic Geochemistry, 17: 519-544.
  • Kaye, JZ, JB Sylvan, KJ Edwards, and JA Baross.  2011. Halomonas and Marinobacter ecotypes from hydrothermal-vent, subseafloor and deep-sea environments.  FEMS Microbiology Ecology, 75: 123-133.
  • Sylvan, JB, AG Turner and KJ Edwards.  2011.  Microbe-metal interactions on endolithic seafloor basalts, p. 65-76.  In: Stolz, JF and RS Oremland (eds.) Microbial Metal and Metalloid Metabolism: Advances and Applications.  ASM Press, Washington DC.
  • Passow U, French MA, Robert M  2011. Biological controls on dissolution of diatom frustules during their descent to the deep ocean: Lessons Learned from Controlled Laboratory Experiments. Deep Sea Research I 58:1147-1157.
  • Z-P. Mei, Z.V. Finkel, A.J. Irwin. 2011. Phytoplankton growth allometry and size-dependent C:N stoichiometry revealed by a variable quota model. Marine Ecology Progress Series, 434: 29-43, 10.3354/meps09149
  • B-Z. Chen, A.J. Irwin, Z.V. Finkel. 2011. Biogeographic distribution of diversity and size-structure of organic-walled dinoflagellate cysts.  Marine Ecology Progress Series.  425:35-45. 10.3354/meps08985
  • Quigg, A.S., A.J. Irwin, Z.V. Finkel. 2011. Testing the evolutionary inheritance of elemental stoichiometry in phytoplankton.  Proceedings of the Royal Society B. 278:526-534. 10.1098/rspb.2010.1356
  • Chen, C.-S., Anaya, J.M., Zhang, S., Spurgin, J., Chuang, C.-Y., Xu, C., Miao, A.-J., Chen, E.Y.T., Schwehr, K.A., Jiang, Y., Quigg, A., Santschi, P.H., and Chin, W.-C. 2011. Effects of engineered nanoparticles on the assembly of exopolymeric substances from marine phytoplankton. PLoS ONE, 6(7) e21865.
  • Arnosti C, Grossart H-P, Muehling M, Joint I, Passow U 2011.  Dynamics of extracellular enzyme activities in seawater under changed atmospheric pCO2: A mesocosm investigation. Aquatic Microbial Ecology 64:285-298.
  • Gaerdes A, Iversen MH, Grossart H-P, Passow U, Ullrich M 2011. Diatom associated bacteria are required for aggregation of Thalassiosira weissflogii. ISME Journal 5:436-445.
  • Benner I, Passow U 2010. Utilization of organic nutrients by coccolithophores. Marine Ecology Progress Series 404:21-29.
  • Miao, A.-J., Luo, Z., Chen, C.-S., Chin, W.-C., Santschi, P.H., Quigg, A. 2010. Zinc Oxide Engineered Nanoparticles: Dissolution and Toxicity to Marine Phytoplankton. Environ. Tox. Chem., 29, 2814 -2822.
  • Miao, A.-J., Luo, Z., Chen, C.-S., Chin, W.-C., Santschi, P.H., and Quigg, A. 2010. Intracellular uptake: A possible mechanism for silver engineered nanoparticle toxicity to a freshwater alga. PLoS ONE, 5(12), 1-8 (e15196).
  • Quigg, A., Litherland, S., Phillips, J.A., & Kevekordes, K. 2010 Phytoplankton productivity across Moreton Bay, Australia: the impact of water quality, light and nutrients on spatial patterns. Eds Peter J.F. Davie and Julie A. Phillips. In, Proceedings of the Thirteenth International Marine Biological Workshop, The Marine Fauna and Flora of Moreton Bay, Queensland. Memoirs of the Queensland Museum — Nature 54 (3): 355-372. Brisbane, Australia.
  • McInnes, A. and Quigg, A. 2010 Near-Annual Fish Kills in Small Embayments: Casual versus Causal Factors.  Journal of Coastal Research. 26: 957-966.
  • Z.V. Finkel and B. Kotrc.  2010. Silica use through time: macroevolutionary change in the morphology of the diatom frustule.  Geomicrobiology Journal. 16:1-13. 10.1080/01490451003702941
  • Loebl, M., Cockshutt, A.M., Campbell, D.A., Z.V. Finkel. 2010. Physiological basis for high resistance to photoinhibition under nitrogen depletion in Emiliania huxleyi.  Limnology and Oceanography.  55: 2150-60. 10.4319/lo.2010.55.5.2150
  • Z.V. Finkel, K.A. Matheson, K. Regan, A.J. Irwin. 2010. Genotypic and phenotypic variation in diatom silicification under paleooceanographic conditions. Geobiology.  8(5): 433-445
  • K.J. Flynn, J.A. Raven, T.A.V. Rees, Z.V. Finkel, A.S Quigg, J. Beardall. 2010. Is the growth rate hypothesis applicable to microalgae?  Journal of Phycology.  46(1): 1-12.
  • Z.V. Finkel, J. Beardall, K.J. Flynn, A.S. Quigg, T.A.V. Rees, J.A. Raven. 2010. Phytoplankton in a changing world: cell size and elemental stoichiometry. Journal of Plankton Research. 32(1):119-137.
  • T. Key, A. McCarthy, D.A. Campbell, C. Six, S. Roy, Z.V. Finkel. 2010. Cell size tradeoffs govern light exploitation strategies in marine phytoplankton. Environmental Microbiology. 12(1):95-104.
  • Miao, A.J., Schwehr, K.A., Xu, C., Zhang, S.J., Quigg, A., and Santschi, P.H. 2009. The algal toxicity of silver engineered nanoparticles and detoxification by exopolymeric substances. Environ. Pollution, 157(11), 3034-3041.
  • Casey, JR, MW Lomas, V Michelou, ST Dyhrman, JW Ammerman and JB Sylvan2009. Phytoplankton taxon-specific orthophosphate (Pi) and ATP utilization in the western subtropical North Atlantic.   Aquatic Microbial Ecology, 58: 31-44.
  • Feng Y, Hare C, Leblanc K, Rose J, Zhang Y, DiTullio G, Lee P, Wilhelm S, Rowe J, Sun J, Nemcek N, Gueguen C, Passow U, Benner I, Brown C, Hutchins D 2009. Effects of increased pCO2 and temperature on the North Atlantic spring bloom. I. The phytoplankton community and biogeochemical response. Marine Ecology Progress Series 388:13-25.
  • Leblanc K, Hare CE, Feng Y, Berg GM, DiTullio GR, Neeley A, Benner I, Sprengel C, Beck A, Sanudo-Wilhelmy SA, Passow U, Klinck K, Rowe JM, Wilhelm SW, Brown CW, Hutchins DA.2009. Distribution of calcifying and silicifying phytoplankton in relation to environmental and biogeochemical parameters during the late stages of the 2005 North East Atlantic Spring Bloom. Biogeosciences 6:2155 – 2179.
  • Z. V. Finkel, A.J. Irwin, C. Jacob-Vaillancourt, E. Reavie, J.P. Smol. 2009. Environmental control of aquatic microbial community size structure varies across aquatic ecosystems. Proceedings of the Royal Society B. 276: 1627-1634. (Cover image)
  • Z-P. Mei, Z.V. Finkel, A.J. Irwin.  2009. Growth rate allometry in response to light and nutrient limitation in phytoplankton. Journal of Theoretical Biology. 259: 582-588.
  • J. Beardall, D. Allen, J. Bragg, Z.V. Finkel, K.J. Flynn, A. Quigg, T.A.V. Rees, A. Richardson and J.A. Raven. 2009. Allometry and stoichiometry of unicellular, colonial and multicellular phytoplankton. Tansley Review. New Phytologist 181(2), 295–309. 10.1111/j.1469-8137.2008.02660.x
  • Suggett, D. J., Stambler, N. Prášil, O., Kolber, Z., Quigg, A., Vázquez-Domínguez, E., Zohary, T., Berman, T., Iluz, D., Levitan, O., Lawson, T., Meeder, E., Lazar, B., Bar-Zeev, E., Medova, H.& Berman-Frank, I. 2009 Nutrient control of oceanic microbial growth during spring in the Gulf of Aqaba. Aquatic Microbial Ecology 56: 227-239.
  • Beardall, J., Ihnken, S. and Quigg, A. 2009 Gross and Net Primary Production: Closing the Gap between Concepts and Measurements. Aquatic Microbial Ecology 56: 113-122.
  • Quigg, A., Broach, L., Denton, W. and Miranda, R. 2009 Water quality in the Dickinson Bayou watershed (Texas, Gulf of Mexico) and health issues. Marine Pollution Bulletin. 58: 896-904.
  • Quigg, A. and Roehrborn, L. 2008  Spatial and temporal distributions of planktonic diatoms in a subtropical bayou. Texas Journal of Science.60: 281-298.
  • Quigg, A., Kevekordes, K. & Phillips, J.A. 2008 Ecophysiological status of nine species of macroalgae and seagrasses in Moreton Bay, Queensland, Australia. Eds Peter J.F. Davie and Julie A. Phillips. In, Proceedings of the Thirteenth International Marine Biological Workshop, The Marine Fauna and Flora of Moreton Bay, Queensland. Memoirs of the Queensland Museum — Nature 54 (1): 391-403. Brisbane, Australia.
  • Thronson, A. and Quigg, A. 2008 Fifty five years of fish kills in Coastal Texas. Estuaries and Coasts.31: 802–813. *Highlighted in Coastal and Estuarine Science News, October 2008
  • Quigg, A. 2008 Trace Elements. Eds Sven Erik Jørgensen and Brian D. Fath. In, Ecological Stoichiometry in the Encyclopedia of Ecology. Vol. [5] 3564-3573 pp. Oxford, Elsevier.
  • Martin, R. E., Quigg, A. and Podkovyrov, V. 2008 The evolution of ocean stoichiometry and diversification of the marine biosphere. Palaeogeography, Palaeoclimatology, Palaeoecology 258: 277–291.
  • Navarro, E., Miao, A.J., Baun, A., Behra, R., Bloch Hartmann, N.I., Filser, J., Quigg, A., Santschi, P.H., Sigg, L. 2008. Ecotoxicity of nanomaterials on photosynthetic organisms and fungi: state of the art and future needs. Ecotoxicology, 17, 372–386.
  • A.J. Irwin and Z.V. Finkel. 2008. Mining a sea of data: deducing environmental controls of remote-sensed chlorophyll. PLoS ONE. 3(1): E3836 10.1371/JOURNAL.PONE.0003836
  • C  Six, Z.V. Finkel, F. Rodriguez, D. Marie, F. Partensky, D.A. Campbell. 2008. Contrasting photoacclimation costs in ecotypes of the eukaryotic picoplankter Ostreococcus. Limnology & Oceanography. 53(1): 255-265
  • Garvey M, Moriceau B, Passow U 2007. Applicability of the FDA assay to determine the viability of marine phytoplankton under different environmental conditions. Marine Ecology Progress Series 352:17-26.
  • Grossart HP, Engel A, Arnosti C, De La Rocha CL, Murray AE, Passow U 2007. Microbial dynamics in autotrophic and heterotrophic seawater mesocosms. III. Organic matter fluxes. Aquatic Microbial Ecology 49:143-156.
  • Murray AE, Arnosti C, De La Rocha CL, Grossart HP, Passow U 2007. Microbial dynamics in autotrophic and heterotrophic seawater mesocosms. II. Bacterioplankton community structure and hydrolytic enzyme activities. Aquatic Microbial Ecology 49:123-141.
  • Moriceau B, Ragueneau O, Garvey M, Passow U 2007. Evidence for reduced biogenic silica dissolution rates in diatom aggregates. Marine Ecology Progress Series 333:129-142.
  • Passow U, De La Rocha CL, Arnosti C, Grossart HP, Murray AE, Engel A 2007. Microbial dynamics in autotrophic and heterotrophic seawater mesocosms. I. Effect of phytoplankton on the microbial loop. Aquatic Microbial Ecology 49:109-121.
  • C. Six, Z.V. Finkel, A.J. Irwin, D.A. Campbell. 2007. Light variability illuminates niche-partitioning among oceanic picocyanobacteria. PLoS ONE 2(12): e1341.
  • Z. V. Finkel, J. Sebbo, M. Katz, A.J.Irwin, O. Schofield, S. Feist-Burkhardt, J. Young, P. Falkowski. 2007. A universal driver of macroevolutionary change in the size of phytoplankton over the Cenozoic. Proceedings of the National Academy of Sciences USA.  104(51): 20416-20420.
  • Berman-Frank, A. Quigg, Z. V. Finkel, A.J. Irwin, L. Haramaty.  2007.  Nitrogen-fixation strategies and Fe requirements in cyanobacteria. Limnology & Oceanography. 52(5): 2260-2269.
  • Z. V. Finkel, A. Quigg, R. Chiampi, O. Schofield & P. Falkowski. 2007.  Phylogenetic diversity in Cd:P regulation in marine phytoplankton. Limnology & Oceanography. 52(3): 1131-1138.
  • Sylvan, JB, A Quigg, S Tozzi & JW Ammerman.  2007.  Eutrophication induced phosphorus limitation in the Mississippi River Plume: Evidence from fast repetition rate fluorometry. Limnology and Oceanography, 52 (6): 2679-2685.
  • Sylvan, JB, Q Dortch, DM Nelson, AF Maier Brown, W Morrison & JW Ammerman.  2006. Phosphorus limits phytoplankton growth on the Louisiana shelf during the period of hypoxia formation.  Environmental Science and Technology, 40 (24): 7548-7553.
  • Grossart HP, Allgaier M, Passow U, Riebesell U 2006. Testing the effect of CO2 concentration on the dynamics of marine heterotrophic bacterioplankton. Limnology and Oceanography 51:1-11.
  • Z.V. Finkel, A. Quigg, J. A. Raven, J. R. Reinfelder, O. E. Schofield, and P. G. Falkowski. 2006. Irradiance and the elemental stoichiometry of marine phytoplankton. Limnology & Oceanography. 51: 2690-2701.
  • A.J. Irwin, Z. V. Finkel, O. Schofield & P. Falkowski. 2006. Scaling-up from nutrient physiology to the size-structure of phytoplankton communities. Journal of Plankton Research. 28(5): 459-471.
  • Quesada I., Chin, W-C, Verdugo P. 2006. Mechanisms of signal transduction in photo-stimulated secretion in Phaeocystis globosa. FEBS Lett. 580: 2201-2206.
  • Quigg, A., Kevekordes, K., Raven, J. A. and Beardall, J. 2006b Limitations on microalgal growth at very low photon flux densities: the role of energy slippage and H+ leakage. Photosynthesis Research, 88: 299-310.
  • Quigg, A., Reinfelder, J.R. and Fisher, N. S. 2006a Copper-uptake kinetics in diverse marine phytoplankton. Limnology and Oceanography, 51: 893-899.
  • Raven, J.A., Andrews, M. and Quigg, A. 2005 The evolution of oligotrophy: implications for the breeding of crop plants for low input agricultural systems. Annals of Applied Biology, 146: 1-20.
  • J.A. Raven, Z. V. Finkel, A.J. Irwin. 2005. Picophytoplankton: bottom-up and top-down controls on ecology and evolution. Vie et Mileu. 55 (3/4): 209-215.
  • Z. V. Finkel, M. Katz, J. Wright, O. Schofield & P. Falkowski. 2005. Climatically driven macroevolutionary patterns in the size of marine diatoms over the Cenozoic. Proceedings of the National Academy of Sciences USA. 102(25): 8927-8932.
  • P. Frost, M. Evans-White, Z. V. Finkel, T. Jensen, V. Matzek. 2005. Are you what you eat? Physiological constraints on organismal stoichiometry in an elementally imbalanced world. Oikos. 109:18-28.
  • De La Rocha CL, Passow U 2004. Recovery of Thalassiosira weissflogii from nitrogen and silicon limitation. Limnology and Oceanography 49:245-255
  • M.E. Katz, Z.V. Finkel, D. Gryzebek, A.H. Knoll, P.G. Falkowski. 2004. Eucaryotic phytoplankton: evolutionary trajectories and global biogeochemical cycles. Annual Review of Ecology, Evolution and Systematics. 35:523-556.
  • Z. V. Finkel, A. J. Irwin and O. Schofield. 2004. Resource limitation alters the ¾ size scaling of metabolic rates in phytoplankton. Marine Ecology Progress Series, Special theme section: Emergent properties of complex marine systems: a macroecological perspective. 273:269-279.
  • O. Schofield, R. Arnone, P. Bissett, C. Davis, Z. Finkel, M. Oliver, M. Moline. 2004. Watercolors in the coastal zone: what can we see? Oceanography. 17(2):30-37.
  • Falkowski, P. G., Katz, M. E., Knoll, A. H., Quigg, A., Raven, J. A., Schofield, O. and Taylor, F. J. R. 2004 The evolutionary history of eukaryotic phytoplankton. Science 305: 354-360.Raven, J.A., Andrews, M. and Quigg, A. 2004  The evolution of oligotrophy in relation to the breeding of crop plants for low input agricultural systems. In Aspects of Applied Biology 72, pp. 99-100, Association of Applied Biologists, Wellesbourne, Warwick, UK.
  • Beardall, J., Quigg, A. and Raven, J.A. 2003 Oxygen consumption: Photorespiration and chlororespiration. (Chapter 8) In Photosynthesis in the Algae. [Eds.] T. Larkum, JA. Raven, and S. Douglas. Advances in Photosynthesis Series, Kluwer Academic Publishing. pp. 157-181.
  • A. Quigg, Z. V. Finkel, A. J. Irwin, Y. Rosenthal, T-Y Ho, J. R. Reinfelder, O. Schofield, F. M. M. Morel and P. G. Falkowski. 2003. The evolutionary inheritance of elemental stoichiometry in marine phytoplankton. Nature, 425: 291-294.
  • T-Y Ho, A. Quigg, Z. V. Finkel, A. J. Milligan, K. Wyman, P. G. Falkowski, and F. M. M. Morel. 2003.  The elemental composition of some marine phytoplankton.  Journal of Phycology, 39(6):1145-1159.
  • Orellana MV, Lessard EJ, Dycus E, Chin W-C, Foy MS, Verdugo P. 2003. Tracing the source and fate of biopolymers in seawater: application of an immunological technique. Mar. Chem. 83: 89-99.
  • Passow U, Engel A, Ploug H 2003. The role of aggregation for the dissolution of diatom frustules. FEMS Microbiology Ecology 46:247-255.
  • Quigg, A. and Beardall, J. 2003 Protein turnover in relation to maintenance metabolism at low photon flux in two marine microalgae. Plant, Cell and Environment26: 1-10.
  • Quigg, A., Beardall, J. and Wydrzynski, T. 2003 An investigation of the photosynthetic O2 – evolving reactions in two marine microalgae as a function of the photon flux during growth. Functional Plant Biology30: 301-308.
  • Shipe RF, Passow U, Brzezinski MA, Graham WM, Pak DK, Siegel DA, Alldredge AL 2002. Effects of the 1997-98 El Nino on seasonal variations in suspended and sinking particles in the Santa Barbara Basin. Progress in Oceanography 54:105-127.
  • Engel A, Goldthwait S, Passow U, Alldredge A 2002. Temporal decoupling of carbon and nitrogen dynamics in a mesocosm diatom bloom. Limnology and Oceanography 47:753-761.
  • Passow U, Shipe RF, Murray A, Pak DK, Brzezinski MA, Alldredge AL 2001. Origin of transparent exopolymer particles (TEP) and their role in the sedimentation of particulate matter. Continental Shelf Research 21:327-346.
  • Z. V. Finkel and A.J. Irwin. 2001. Light absorption and the filter amplification correction: species-specific and size-specific effects.  Journal of Experimental Marine Biology and Ecology, 259:51-61.
  • Z. V. Finkel. 2001. Light absorption and the size scaling of light-limited growth and photosynthesis in marine diatoms. Limnology & Oceanography, 46(1): 86-94.
  • Z. V. Finkel and A.J. Irwin. 2000. Modelling size-dependent photosynthesis: light absorption and the allometric rule. Journal of theoretical Biology, 204: 361-369.

Prior to 2000

  • Lambert, C.D., Bianchi, T.S., and Santschi, P.H. 1999. Cross-shelf changes in phytoplankton community composition in the Gulf of Mexico (Texas shelf/slope): The use of plant pigments as biomarkers. Continental Shelf Research, 19, 1-21.
  • Murray AE, Blakis A, Massana R, Strawzewski S, U. Passow, Alldredge AL, DeLong EF 1999. A time series assessment of planktonic archaeal variability in Santa Barbara Channel. Aquatic Microbial Ecology 20:129-145.
  • Kiørboe T, Hansen J, Alldredge AL, Jackson G, Passow U, Dam H, Drapeau D, Waite A, Garcia C 1996. Sedimentation of phytoplankton during a spring diatom bloom: Rates and  mechanisms. Journal of Marine Research 54:1123-1148.
  • Alldredge AL, Gotschalk C, Passow U, Riebesell U 1995. Mass aggregation of diatom blooms: Insights from a mesocosm study. Deep-Sea Research 42:9-28
  • Crocker KM, Passow U 1995. Differential aggregation of diatoms. Marine Ecology Progress Series 117:249-257.
  • Riebesell U, Reigstad M, Wassmann P, Noji T, Passow U 1995. On the trophic fate of Phaeocystis pouchetii (Hariot): VI. Significance of Phaeocystis-derived mucus for vertical flux. Netherlands Journal of Sea Research 33:193-203.
  • Logan BE, Passow U, Alldredge AL 1994. Variable retention of diatoms on screens during size separations. Limnology and Oceanography 39:390-395.
  • Passow U, Wassman P 1994. On the trophic fate of Phaeocystis pouchetti (Hariot): IV The formation of marine snow by P. pouchetti. Marine Ecology Progress Series 104:153-161.
  • Passow U, Peinert R 1993. The role of plankton in particle flux: Two case studies from the NE-Atlantic. Deep- Sea Research II 40:573-585.
  • Passow U, Peinert R, Zeitzschel B 1993. Distribution of suspended matter and sedimentation during the inter-monsoon period off Oman (West Arabian Sea). Deep-Sea Research II 40: 833-849.
  • Passow U 1991a. Species specific sedimentation and sinking velocities of diatoms. Marine Biology 108:449-455.
  • Passow U 1991b. Vertical migration of Gonyaulax catenata and Mesodinium rubrum. Marine Biology 110:455-463.
  • Karuh M, Leppänen J-M, Nømmann S, Passow U, Postel L, Schulz S  1990. Spatio-temporal mosaic of the phytoplankton spring bloom in the open Baltic Sea in 1986. Marine Ecology Progress Series 66:301-309.
  • Smetacek V, Passow U 1990. Spring bloom initiation and Sverdrup’s critical depth model. Limnology and Oceanography 35:228-234.
  • Noji T, Passow U, Smetacek V 1986. Interaction between pelagial and benthal during autumn in Kiel Bight Baltic Sea I. Development and sedimentation of phytoplankton blooms. Ophelia 26:333-350.
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